tbprofiler¶
The pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then calls variants using bcftools. These variants are then compared to a drug-resistance database. We also predict the number of reads supporting drug resistance variants as an insight into hetero-resistance (not applicable for minION data)
Environment Modules¶
Run module spider tbprofiler to find out what environment modules are available for this application.
System Variables¶
- HPC_TBPROFILER_DIR - installation directory
- HPC_TBPROFILER_BIN - executable directory