ssr_pipeline¶
SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (SSRs; for example, microsatellites) from paired-end high-throughput Illumina DNA sequencing data. The program suite contains three analysis modules along with a fourth control module that can be used to automate analyses of large volumes of data.
Environment Modules¶
Run module spider ssr_pipeline to find out what environment modules are available for this application.
System Variables¶
- HPC_SSR_PIPELINE_DIR - installation directory
- HPC_SSR_PIPELINE_BIN - executable directory