srst2¶
srst2 is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Environment Modules¶
Run module spider srst2 to find out what environment modules are available for this application.
System Variables¶
- HPC_SRST2_DIR - installation directory
- HPC_SRST2_BIN - executable directory