samblaster¶
samblaster is a fast and flexible program for marking duplicates in read-id sorted paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.
Environment Modules¶
Run module spider samblaster to find out what environment modules are available for this application.
System Variables¶
- HPC_SAMBLASTER_DIR - installation directory
- HPC_SAMBLASTER_BIN - executable directory