plasflow¶
PlasFlow is a set of scripts used for prediction of plasmid sequences in metagenomic contigs. It relies on the neural network models trained on full genome and plasmid sequences and is able to differentiate between plasmids and chromosomes with accuracy reaching 96%. It outperforms other available solutions for plasmids recovery from metagenomes and incorporates the thresholding which allows for exclusion of incertain predictions.
Environment Modules¶
Run module spider plasflow to find out what environment modules are available for this application.
System Variables¶
- HPC_PLASFLOW_DIR - installation directory
- HPC_PLASFLOW_BIN - executable directory
- HPC_PLASFLOW_EXE - example test directory