open-cravat¶
Open-CRAVAT is a python package that performs genomic variant interpretation including variant impact, annotation, and scoring. It has a modular architecture with a wide variety of analysis modules that are developed both by the CRAVAT team and the broader variant analysis community. Open-CRAVAT is a product of the Karchin Lab at Johns Hopkins University in collaboration with In Silico Solutions with funding provided by the National Cancer Institute's ITCR program.
Environment Modules¶
Run module spider open-cravat to find out what environment modules are available for this application.
System Variables¶
- HPC_OPENCRAVAT_DIR - installation directory
- HPC_OPENCRAVAT_BIN - executable directory