ncbi-vdb¶
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Environment Modules¶
Run module spider ncbi-vdb to find out what environment modules are available for this application.
System Variables¶
- HPC_NCBIVDB_DIR - installation directory
- HPC_NCBIVDB_INC - includes directory
- HPC_NCBIVDB_LIB - library directory
Version 2.6.3 ]], lpathA = { ["/apps/gcc/5.2.0/ncbi-vdb/2.6.3/lib"] = 1, }, ["luaExt"] = 6, ["mpath"] = "/apps/lmod/modulefiles/compiler/gcc/5.2.0", ["pV"] = "000000002.000000006.000000003.zfinal", ["wV"] = "000000002.000000006.000000003.zfinal", whatis = { "Name: ncbi-vdb", "Version: 2.6.3", "Category: ngs" , "URL: https://github.com/ncbi/ncbi-vdb", "Description: NCBI SRA toolkit SDK", }, }, ["ncbi-vdb/2.8.2"] = { ["Category"] = "ngs", ["Description"] = "NCBI SRA toolkit SDK", ["Name"] = "ncbi-vdb", ["URL"] = "https://github.com/ncbi/ncbi-vdb", ["Version"] = "2.8.2", ["canonical"] = "2.8.2", ["fn"] = "/apps/lmod/modulefiles/compiler/gcc/5.2.0/ncbi-vdb/2.8.2.lua", ["help"] = [[ The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by