magpurify¶
The MAGpurify package uses a combination of different features and algorithms to identify contamination in metagenome-assembled genomes (MAGs). Contamination is defined as contigs that originated from a different species relative to the dominant organism present in the MAG.
Environment Modules¶
Run module spider magpurify to find out what environment modules are available for this application.
System Variables¶
- HPC_MAGPURIFY_DIR - installation directory
- HPC_MAGPURIFY_BIN - executable directory
- MAGPURIFYDB - database directory