kvarq¶
KvarQ: Targeted and direct variant calling in FastQ reads of bacterial genomes The program KvarQ performs rapid in silico genotyping for selected loci (e.g. phylogenetic SNPs, drug resistance mutations) in bacterial genome sequences in FastQ format. Mapping to a whole-genome reference sequence or de novo assembly or the short reads is not necessary.
Environment Modules¶
Run module spider kvarq to find out what environment modules are available for this application.
System Variables¶
- HPC_KVARQ_DIR - installation directory
- HPC_KVARQ_BIN - executable directory