imoka¶
iMOKA is a software that enables a comprehensive analysis of sequencing data from large cohorts to generate robust classification models or explore specific genetic elements associated with disease etiology. iMOKA uses a fast and accurate feature reduction step that combines a Naïve Bayes Classifier augmented by an adaptive Entropy filter and a graph-based filter to rapidly reduce the search space. By using a flexible file format and distributed indexing, iMOKA can easily integrate data from multiple experiments and also reduces disk space requirements.
Citation:
Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to
analyze large collections of sequencing data. Genome Biol 21, 261 (2020).
https://doi.org/10.1186/s13059-020-02165-2
This module sets the following environment variables:
- HPC_IMOKA_DIR - installation directory
- HPC_IMOKA_BIN - executable directory
Environment Modules¶
Run module spider imoka to find out what environment modules are available for this application.
System Variables¶
- HPC_IMOKA_DIR - installation directory
- HPC_IMOKA_BIN - executable directory