illumina-utils¶
This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 2.11.0 or higher.
Environment Modules¶
Run module spider illumina-utils to find out what environment modules are available for this application.
System Variables¶
- HPC_ILLUMINAUTILS_DIR - installation directory
- HPC_ILLUMINAUTILS_BIN - executable directory