hapdup

hapdup website

HapDup takes as input a haploid long-read assembly, such as produced with Flye or Shasta. Currenty, ONT reads (Guppy 5+ recommended) and PacBio HiFi reads are supported.

Environment Modules

Run module spider hapdup to find out what environment modules are available for this application.

System Variables

• HPC_HAPDUP_DIR - installation directory
• HPC_HAPDUP_BIN - executable directory