fcGENE¶
This is a format conversion tool for genotype data such as PLINK and MACH. The usage is two-fold. First, convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM. Second, transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
Environment Modules¶
Run module spider fcGENE to find out what environment modules are available for this application.
System Variables¶
- HPC_FCGENE_DIR - installation directory
- HPC_FCGENE_BIN - executable directory