fastsimcoal¶
While preserving all the simulation flexibility of simcoal2, fastsimcoal is now implemented under a faster continous-time sequential Markovian coalescent approximation, allowing it to efficiently generate genetic diversity for different types of markers along large genomic regions, for both present or ancient samples. It includes a parameter sampler allowing its integration into Bayesian or likelihood parameter estimation procedure.
Environment Modules¶
Run module spider fastsimcoal to find out what environment modules are available for this application.
System Variables¶
- HPC_FASTSIMCOAL2_DIR - installation directory
- HPC_FASTSIMCOAL2_BIN - executable directory
- HPC_FASTSIMCOAL2_DOC - documentation directory
- HPC_FASTSIMCOAL2_EXE - examples directory