c-wap¶
C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumina) whole genome sequencing data of DNA extracted from wastewater. It was developed for SARS-CoV2 and its variants.
Environment Modules¶
Run module spider c-wap to find out what environment modules are available for this application.
System Variables¶
- HPC_CWAP_DIR - installation directory
- HPC_CWAP_BIN - executable directory
- KRAKEN2_DEFAULT_DB - reference database