aTRAM¶
aTRAM ("automated target restricted assembly method") is an iterative assembler that performs reference-guided local de novo assemblies using a variety of available methods. It is well-suited to various tasks where Next-Generation Sequence (NGS) data needs to be queried for gene sequences, such as phylogenomics. The design philosophy is modular and expandable, with support for four de-novo assemblers to date: Velvet, Abyss, Trinity, and Spades.
Environment Modules¶
Run module spider aTRAM to find out what environment modules are available for this application.