Trim Galore¶
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). It's main features are:
Environment Modules¶
Run module spider Trim Galore to find out what environment modules are available for this application.
System Variables¶
- HPC_TRIMGALORE_DIR - installation directory
- HPC_TRIMGALORE_BIN - executable directory
This version is built with "AS_READ_MAX_NORMAL_LEN_BITS=11" for short read assembly.