TGICL¶
TGICL Software package automates clustering and assembly of a large EST/mRNA dataset. The clustering is performed by a slightly modified version of NCBI's megablast , and the resulting clusters are then assembled using CAP3 assembly program. TGICL starts with a large multi-FASTA file (and an optional peer quality values file) and outputs the assembly files as produced by CAP3.
Environment Modules¶
Run module spider TGICL to find out what environment modules are available for this application.
System Variables¶
- HPC_TGICL_DIR - installation directory
- HPC_TGICL_BIN - executable directory
- HPC_TGICL_CONF - conf directory