TEToolkit¶
TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.
Environment Modules¶
Run module spider TEToolkit to find out what environment modules are available for this application.
System Variables¶
- HPC_TETOOLKIT_DIR - installation directory
- HPC_TETOOLKIT_BIN - executable directory