TEMP2¶
TEMP2 is an algorithm for detecting transposon insertions using short-read whole-genome sequencing data. It can not only precisely detect germline transposon insertions, but also estimate the number of uninherited/somatic transposon insertions by removing artificial insertion introduced by chimeric reads.
Environment Modules¶
Run module spider TEMP2 to find out what environment modules are available for this application.
System Variables¶
- HPC_TEMP2_DIR - installation directory
- HPC_TEMP2_BIN - executable directory