SpliceGrapher¶
SpliceGrapher is a Python package for creating splice graphs from RNA-Seq data, guided by gene models and EST data (when available). Starting with version 0.2.2 we introduced SpliceGrapherXT that can convert splice graph predictions into transcript predictions.
Environment Modules¶
Run module spider SpliceGrapher to find out what environment modules are available for this application.
System Variables¶
- HPC_SPLICEGRAPHER_DIR - installation directory
- HPC_SPLICEGRAPHER_BIN - executable directory