Sickle¶
Sickle is a tool that uses sliding sequence windows along with quality and length thresholds to determine for intelligent 3'/5'-end trimming of short reads. 5'-end trimming can be disabled. Sickle also has an option to discard reads with any Ns in them.
Environment Modules¶
Run module spider Sickle to find out what environment modules are available for this application.
System Variables¶
- HPC_SICKLE_DIR - installation directory
- HPC_SICKLE_BIN - executable directory