STAR-Fusion¶
STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.
Environment Modules¶
Run module spider STAR-Fusion to find out what environment modules are available for this application.
System Variables¶
- HPC_STARFUSION_DIR - installation directory
- HPC_STARFUSION_REF - CTAT