SOAPdenovo¶
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.
Environment Modules¶
Run module spider SOAPdenovo to find out what environment modules are available for this application.
System Variables¶
- HPC_SOAPDENOVO_DIR - installation directory
- HPC_SOAPDENOVO_BIN - executable directory