Ragout¶
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).
Environment Modules¶
Run module spider Ragout to find out what environment modules are available for this application.
System Variables¶
- HPC_RAGOUT_DIR - installation directory
- HPC_RAGOUT_BIN - executable directory