Prokka¶
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
Environment Modules¶
Run module spider Prokka to find out what environment modules are available for this application.
System Variables¶
- HPC_PROKKA_DIR - Installation directory
- HPC_PROKKA_BIN - Executable directory