PennCNV¶
PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays. Currently it can handle signal intensity data from Illumina and Affymetrix arrays. With appropriate preparation of file format, it can also handle other types of SNP arrays and oligonucleotide arrays.
Environment Modules¶
Run module spider PennCNV to find out what environment modules are available for this application.
System Variables¶
- HPC_PENNCNV_DIR - installation directory
- HPC_PENNCNV_BIN - executable directory
- HPC_PENNCNV_DOC - documentation directory
- HPC_PENNCNV_EXE - examples directory