PASA¶
The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.
Environment Modules¶
Run module spider PASA to find out what environment modules are available for this application.
System Variables¶
- HPC_PASA_DIR - installation directory
- HPC_PASA_BIN - executable directory
- HPC_PASA_CONF - config file directory
- PASAHOME - base directory
- UNIVECDB - UniVec database location