NextDenovo¶
NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strategy similar to canu (no correction step for PacBio Hifi reads), but requires significantly less computing resources and storages. After assembly, the per-base accuracy is about 98-99.8%, to further improve single base accuracy, please use NextPolish.
Environment Modules¶
Run module spider NextDenovo to find out what environment modules are available for this application.
System Variables¶
- HPC_NEXTDENOVO_DIR - installation directory
- HPC_NEXTDENOVO_BIN - executable directory