NanoSV¶
NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data, as described here: https://www.nature.com/articles/s41467-017-01343-4 https://link.springer.com/article/10.1007%2Fs00401-017-1743-5
Environment Modules¶
Run module spider NanoSV to find out what environment modules are available for this application.
System Variables¶
- HPC_NANOSV_DIR - installation directory
- HPC_NANOSV_BIN - executable directory