NanoCount¶
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Environment Modules¶
Run module spider NanoCount to find out what environment modules are available for this application.
System Variables¶
- HPC_NANOCOUNT_DIR - installation directory
- HPC_NANOCOUNT_BIN - executable directory