MitoPhAST¶
The increased rate at which complete mitogenomes are being sequenced and their increasing use for phylogenetic studies have resulted in a bioinformatics bottleneck in preparing and utilising such data for phylogenetic data analysis. We present, MitoPhAST, an automated tool that: 1) Identifies annotated protein-coding gene (PCG) and ribosomal RNA (rRNA) features directly from complete/partial GenBank/EMBL-format mitogenome files and generates a standardized, concatenated and partitioned nucleotide/amino acid alignments.
Environment Modules¶
Run module spider MitoPhAST to find out what environment modules are available for this application.
System Variables¶
- HPC_MITOPHAST_DIR - installation directory
- HPC_MITOPHAST_BIN - executable directory
- HPC_MITOPHAST_DOC - documentation directory
- HPC_MITOPHAST_DAT - data directory
- HPC_MITOPHAST_DB - database directory