MITObim¶
The pipeline was originally developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the Iontorrent, 454 and PacBio sequencing platforms.
Environment Modules¶
Run module spider MITObim to find out what environment modules are available for this application.
System Variables¶
- HPC_MITOBIM_DIR - installation directory
- HPC_MITOBIM_BIN - executable directory
- HPC_MITOBIM_SCP - scripts directory
- HPC_MITOBIM_EXE - example directory
- HPC_MITOBIM_DOC - documentation directory