MISO¶
MISO (Mixture-of-Isoforms) is a probabilistic framework that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples. By modeling the generative process by which reads are produced from isoforms in RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.
Environment Modules¶
Run module spider MISO to find out what environment modules are available for this application.
System Variables¶
- HPC_MISO_DIR - installation directory
- HPC_MISO_BIN - executable directory