MIDAS¶
MIDAS is an integrated pipeline that leverages >30,000 reference genomes to estimate bacterial species abundance and strain-level genomic variation, including gene content and SNPs, from shotgun metagnomes.
Environment Modules¶
Run module spider MIDAS to find out what environment modules are available for this application.
System Variables¶
- HPC_MIDAS_DIR - installation directory
- HPC_MIDAS_BIN - executable directory
- MIDAS_DB - reference database directory