MHAP¶
MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
Environment Modules¶
Run module spider MHAP to find out what environment modules are available for this application.
System Variables¶
- HPC_MHAP_DIR - installation directory
- HPC_MHAP_BIN - executable directory
- HPC_MHAP_LIB - documentation directory