MGEScan¶
MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.
Environment Modules¶
Run module spider MGEScan to find out what environment modules are available for this application.
System Variables¶
- HPC_MGESCAN_DIR - installation directory
- HPC_MGESCAN_BIN - executable directory