Jellyfish¶
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
Environment Modules¶
Run module spider Jellyfish to find out what environment modules are available for this application.
System Variables¶
- HPC_JELLYFISH_DIR - installation directory
- HPC_JELLYFISH_BIN - executable directory
- HPC_JELLYFISH_LIB - libraries directory
- HPC_JELLYFISH_INC - includes directory