IDBA-MT¶
IDBA-MT is an iterative De Bruijn Graph De Novo short read assembler for meta-transcriptome. It is purely de novo assembler based on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig length using paired-end reads information.
Environment Modules¶
Run module spider IDBA-MT to find out what environment modules are available for this application.
System Variables¶
- HPC_IDBA_MT_DIR - installation directory
- HPC_IDBA_MT_BIN - executable directory
- HPC_IDBA_MT_DOC - documentation directory