HiC-Pro¶
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to normalized contact maps. It supports the main Hi-C protocols, including digestion protocols as well as protocols that do not require restriction enzymes such as DNase Hi-C. In practice, HiC-Pro was successfully applied to many data-sets including dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data.
Environment Modules¶
Run module spider HiC-Pro to find out what environment modules are available for this application.
System Variables¶
- HPC_HICPRO_DIR - installation directory
- HPC_HICPRO_BIN - executable directory