HapCompass¶
HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph where SNPs are nodes and edges are defined by the sequencing reads and viewed as supporting evidence of co-occuring SNP alleles in a haplotype.
Environment Modules¶
Run module spider HapCompass to find out what environment modules are available for this application.
System Variables¶
- HPC_HAPCOMPASS_DIR - installation directory
- HPC_HAPCOMPASS_BIN - executable directory
- HPC_HAPCOMPASS_DOC - documentation directory
- HPC_HAPCOMPASS_EXE - examples directory