GenomeThreader¶
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was motivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plant genome annotation.
Environment Modules¶
Run module spider GenomeThreader to find out what environment modules are available for this application.
System Variables¶
- HPC_GTH_DIR - installation directory
- HPC_GTH_BIN - executable directory