GRIDSS¶
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence.
Environment Modules¶
Run module spider GRIDSS to find out what environment modules are available for this application.
System Variables¶
- HPC_GRIDSS_DIR - installation directory
- HPC_GRIDSS_BIN - executable directory