Flye¶
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and outputs polished contigs. Flye also includes a special mode for metagenome assembly.
Environment Modules¶
Run module spider Flye to find out what environment modules are available for this application.
System Variables¶
- HPC_FLYE_DIR - installation directory
- HPC_FLYE_BIN - executable directory