Finder¶
finder is a gene annotator pipeline which automates the process of downloading short reads, aligning them and using the assembled transcripts to generate gene annotations. Additionally it uses protein sequences and reports gene predictions by BRAKER2. It is a fast, scalable, platform independent software that generatess gene annotations in GTF format. finder accepts inputs through command line interface. It finds several novel genes/transcripts and also reports the tissue/conditions they were found to be in.
Environment Modules¶
Run module spider Finder to find out what environment modules are available for this application.
System Variables¶
- HPC_FINDER_DIR - installation directory
- HPC_FINDER_BIN - executable directory