ExpansionHunter¶
ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs). EHdn is intended for analysis of a collection of BAM/CRAM files containing alignments of short (100-200bp) reads.
Environment Modules¶
Run module spider ExpansionHunter to find out what environment modules are available for this application.
System Variables¶
- HPC_EXPANSIONHUNTERDENOVO_DIR - installation directory