DVGfinder¶
DVGfinder is a tool that integrates the most used DVGs search algorithms, ViReMa-a and DI-tector, in a unique workflow, making the analysis of a sample easier and more intuitive. Also, DVGfinder_v3 implements a Gradient Boosting classifier to try to reduce the number of false positives introduced by the search algorithms and generates an HTML report with interactive tables and plots that facilitates a first exploration of the results.
Environment Modules¶
Run module spider DVGfinder to find out what environment modules are available for this application.
System Variables¶
- HPC_DVGFINDER_DIR - installation directory
- HPC_DVGFINDER_BIN - executable directory
- HPC_DVGFINDER_REF - reference data directory
DVGfinder should be run with: dvgfinder -fq path_to_fastq_file [-r path_to_fasta_virus_reference] [-m margin] [-t threshold] [-n number_processes] [-s polarity]