Clover¶
Clover is a clustering-oriented de novo assembler for Illumina sequences, which bases on the de Bruijn graph method and utilizes a novel k-mer clustering approach from the overlap-based concept to improve the robustness with respect to sequencing error especially using large k-mers. Clover achieves a superior assembly quality in terms of corrected N50 and E-size.
Environment Modules¶
Run module spider Clover to find out what environment modules are available for this application.
System Variables¶
- HPC_CLOVER_DIR - installation directory
- HPC_CLOVER_BIN - executable directory