CellRanger-DNA¶
Cell Ranger DNA is a set of analysis pipelines that process Chromium single cell DNA sequencing output to align reads, identify copy number variation (CNV), and compare heterogeneity among cells.
Environment Modules¶
Run module spider CellRanger-DNA to find out what environment modules are available for this application.
System Variables¶
- HPC_CELLRANGERDNA_DIR - installation directory
- HPC_CELLRANGERDNA_BIN - executable directory
- HPC_CELLRANGERDNA_REF - reference data directory
Available references: GRCh37, GRCh38