CellRanger-ATAC¶
The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe Cell Browser:
Environment Modules¶
Run module spider CellRanger-ATAC to find out what environment modules are available for this application.
System Variables¶
- HPC_CELLRANGERATAC_DIR - installation directory
- HPC_CELLRANGERATAC_BIN - executable directory
Available reference datasets: ercc92, GRCh38, hg19, hg19_and_mm10, mm10